PubMed 32. Golovina AY, Sergiev PV, Golovin AV, Serebryakova MV, Demina I, Govoru VM, Dontsova OA: The yfiC gene of E. coli encodes an adenine-N6 methyltransferase that specifically
modifies A37 of tRNA1Val (cmo5UAC). RNA 2009, 15:1134–1141.PubMedCrossRef 33. Smiley BL, Lupski JR, Svec PS, McMacken R, Godson GN: Sequences of the Escherichia coli dnaG primase gene and PX-478 research buy regulation of its expression. Proc Natl Acad Sci USA 1982, 79:4550–4554.PubMedCrossRef 34. Pagès V, Koffel-Schwartz N, Fuchs RPP: recX, a new SOS gene that is co-transcribed with the recA gene GSK3326595 research buy in Escherichia coli. DNA Repair 2003, 2:273–284.PubMedCrossRef 35. Garst AD, Edwards AL, Batey RT: Riboswitches: structures and mechanisms. Cold Spring Harbor Perspect Biol 2011, 3:a003533.CrossRef 36. Roth A, Winkler WC, Regulski EE, Lee BWK, Lim J, Jona I, Barrick JE, Ritwik A, Kim JN, Welz R, Iwata-Reuyl D, Breaker RR: A riboswitch selective for the VX-809 price queuosine precursor preQ1 contains an unusually small aptamer domain. Nat Struct Mol Biol 2007, 14:308–317.PubMedCrossRef 37. Chang TH, Huang HD, Wu LC, Yeh CT, Liu BJ, Horng JT: Computational identification of riboswitches based on RNA conserved functional sequences and conformations. RNA 2009, 15:1426–1430.PubMedCrossRef 38. Fisher CR, Davies NM, Wyckoff EE, Feng Z, Oaks EV, Payne SM: Genetics and virulence association of the Shigella flexneri sit iron transport system. Infect Immun 2009, 77:1992–1999.PubMedCrossRef
39. Edgar RC: MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res check details 2004, 32:1792–1797.PubMedCrossRef 40. Yu Z, Morrison M: Comparisons of different hypervariable regions of rrs genes for use if fingerprinting of microbial communities by PCR-Denaturing Gel Electrophoresis. Appl Environ Microbiol 2004, 70:4800–4806.PubMedCrossRef 41. Vidal M, Kruger E, Durán C, Lagos R, Levine M, Prado V, Toro C, Vidal R: Single multiplex PCR assay to identify simultaneously
the six categories of diarrheagenic Escherichia coli associated with enteric infections. J Clin Microbiol 2005, 43:5362–5365.PubMedCrossRef 42. Miller J: Experiments in Molecular Genetics. NY: Cold Spring Harbor Laboratory; 1972:352–355. 43. Ho SN, Hunt HD, Horton RM, Pullen JK, Pease LR: Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 1989, 77:51–59.PubMedCrossRef 44. Datsenko KA, Wanner BL: One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 2000, 97:6640–6645.PubMedCrossRef Competing interests The authors declare that they have no competing interests. Authors’ contributions VCC: performed cloning, the enzymatic assay, data analysis. VPT: performed ex vivo assays of the wild type and mutant strains of Shigella and the enzymatic activity under different growth conditions. CM: performed the RT-PCR of the mRNA isolated from Shigella flexneri. CRF: performed the Biolog assay in collaboration with JCS.