Particular interesting genes, like sulfatases, were manually evaluated. The genome of R. sallentina SM41 features 6893 predicted
ORFs, of which 4825 are shared with other Rhodopirellula species. A rather high number of 138 ORFs was found to be shared with planctomycetes outside of the genus Rhodopirellula. Based on 16S rDNA similarities and ANI analyses, R. sallentina SM41 clusters together with and Rhodopirellula rubra SWK7 are rather distantly related to R. baltica SH1T. The type strain for R. rubra has been described by Bondoso et al. (in press). Like for all presented Rhodopirellula draft genomes, the number of Saracatinib in vitro sulfatase encoding genes was exceptionally high ( Wegner et al., 2013) ( Table 1.). A tendency for sulfatase gene clustering was observed, although only few sulfatase maturation systems were identified. While all Rhodopirellula species harbor only few genes for peptidoglycan synthesis, one additional murA gene has been identified in the R. sallentina SM41 draft genome. This Whole Genome Shotgun project has been deposited in INSDC PD98059 (DDBJ/EBI-ENA/GenBank) under the accession number ANOH00000000. The sequence associated contextual (meta)data are MIxS (Yilmaz et al., 2011) compliant. This study was supported by the German Federal Ministry of Education
and Research (BMBF) as part of the Microbial Interactions in Marine Systems (MIMAS) project (Grant No. 03F0480A). “
“Rhodopirellula belongs to the ubiquitous bacterial phylum Planctomycetes. Members of the Planctomycetes are abundant in particulate fractions of marine ecosystems and considered as important participants in the global carbon and nitrogen cycles. They convert substantial amounts of organic material, such as “marine snow” (aggregates of zooplankton, phytoplankton and protists), into carbon dioxide. Their importance in marine systems was recently discovered and documented in several publications ( Glöckner et al., 2003,
Winkelmann and Harder, 2009 and Winkelmann et al., 2010). A collection of 70 Rhodopirellula strains obtained from different European seas revealed 13 distinct operational taxonomic units (OTUs). These were Tau-protein kinase defined by taxonomic studies with a combination of 16S ribosomal DNA (rDNA) sequence comparisons, DNA–DNA-hybridization (DDH) and a novel multi-locus sequence analysis (MLSA) approach that employed primers in putatively conserved regions of nine housekeeping genes ( Winkelmann et al., 2010). First evidence for a limited habitat spectrum of these sessile bacteria was detected by annotation and genome comparison of the strains. Here we report the permanent draft genome sequence of Rhodopirellula maiorica strain SM1 (= JCM 17615 = DSM 24050) which originated from sediment near Pt. Andratx, Mallorca, Spain (39.5446 N 2.3875 E) ( Winkelmann and Harder, 2009).