To determine CP-868596 datasheet whether sYJ20 confers an advantage to bacterial survival in the presence of tigecycline challenge, the survival frequencies were determined for the wild type SL1344 and YJ104 in the presence of 1 ×, 2 ×, 4 × and 8 × MIC of tigecycline. Both SL1344 and YJ104 failed to form any

colonies on 2 ×, 4 × and 8 × MIC plates after overnight incubation at 37°C. The survival rates for SL1344 and YJ104 at 1 × the MIC were ~2.1 × 10-7 and 1.1 × 10-7 respectively (Figure 7). Despite this modest decrease, statistical analysis on four biological replicate experiments supports that the reduced survival rate observed in YJ104 is indeed significant (P < 0.05). The survival rate was restored upon complementation where YJ107 (YJ104/GSI-IX order pACYC177·sYJ20) yielded a survival frequency close but higher than Geneticin SL1344 (2.1 × 10-7, Figure 7), and as expected the plasmid control YJ110 (YJ104/pACYC177)

had a similar survival rate to YJ104 (1.0 × 10-7, Figure 7). This reduction in the survival rate of YJ110 compared to the one of YJ107 was also found to be statistically significant (P < 0.05). Overall, it suggests that the absence of sYJ20 could confer a subtle but reduced survival rate in the presence of tigecycline. Figure 7 Survival rate assays of SL1344, YJ104, YJ107 and YJ110 when cells were challenged with MIC of tigecycline. Fresh overnight culture was spread on RDM plates either supplemented with MIC of tigecycline (0.25 μg/ml) or nothing (as a control). Colony number was determined after overnight incubation at 37°C. Survival rate was calculated as follows: cfu/ml on the tigecycline plate divided by cfu/ml on the control

plate. P values were also calculated from at least three biological replicates. We found that statistical comparisons of SL1344 versus YJ104 (ΔsYJ20) and YJ107 (YJ104/pACYC177·sYJ20) versus YJ110 (YJ104/pACYC177) are significant (P < 0.05) Discussion Small RNAs are regulatory molecules that enhance a bacterium’s adaptability in a constantly changing Thalidomide environment [1–4]. As regulatory molecules, sRNAs have several advantages over their protein counterparts. Firstly, sRNAs consist of a short nucleotide sequence which does not require translation into a peptide sequence. This ensures that the response from sRNA mediated regulators would be much more rapid than protein mediated factors [35]. Accordingly, modelling studies suggest that due to the rapid kinetics associated with sRNA production, the downstream regulon response is correspondingly prompt when compared to protein based factors, a valuable trait in constantly evolving environments [35]. Moreover, base pairing flexibility presumably allows rapid evolution of sRNAs [35]. Finally, sRNA-mRNA interaction generally lacks specificity and often imperfect binding occurs ensuring that more than one target mRNA is affected, thereby expanding the repertoire of the sRNA regulators [8].